Protein Info for DVU3324 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: ABC transporter, ATP-binding protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 PF00005: ABC_tran" amino acids 22 to 169 (148 residues), 117 bits, see alignment E=1e-37

Best Hits

Swiss-Prot: 46% identical to LOLD_PECAS: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K02003, (no description) (inferred from 100% identity to dvu:DVU3324)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q725V1 at UniProt or InterPro

Protein Sequence (221 amino acids)

>DVU3324 ABC transporter, ATP-binding protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MMLEARHITKSHPGAHSPVLYDTSLSVAEGEFIAVVGRSGSGKSTLLNVLASLSLPDSGH
VLYEGEDITTATEARRNALRHRDFAVIFQQHHLMPYLSALENVLLPFMASLTPIPAPLRD
KGRDVLTRVGLAGRADALPGQLSGGEQQRVAIARALVRDARILFADEPTGSLDSATGDDV
MQLLQTLNGGGLTIVMVTHNAEYASLAHRTLHMADGCLRPA