Protein Info for DVU3199 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved hypothetical protein TIGR00103 (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 103 TIGR00103: DNA-binding protein, YbaB/EbfC family" amino acids 3 to 101 (99 residues), 86 bits, see alignment E=8.6e-29 PF02575: YbaB_DNA_bd" amino acids 9 to 97 (89 residues), 110.6 bits, see alignment E=1.7e-36

Best Hits

Swiss-Prot: 52% identical to Y028_MOOTA: Nucleoid-associated protein Moth_0028 (Moth_0028) from Moorella thermoacetica (strain ATCC 39073 / JCM 9320)

KEGG orthology group: K09747, hypothetical protein (inferred from 99% identity to dvl:Dvul_0188)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q725L4 at UniProt or InterPro

Protein Sequence (103 amino acids)

>DVU3199 conserved hypothetical protein TIGR00103 (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRGMNDLLRQANLMQSKLAKLQSEMADKSFEASSGGGMVKVSVTGRQELKSITIDPKALE
GGDVEMLQDLILTAVNEGVRVSRATMEREMNALTGGLRLPGII