Protein Info for DVU3191 in Desulfovibrio vulgaris Hildenborough JW710
Name: rluC
Annotation: ribosomal large subunit pseudouridine synthase C (TIGR)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K06179, ribosomal large subunit pseudouridine synthase C [EC: 5.4.99.12] (inferred from 100% identity to dvu:DVU3191)Predicted SEED Role
"Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)" in subsystem Ribosome biogenesis bacterial (EC 4.2.1.70)
MetaCyc Pathways
- pseudouridine degradation (1/2 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 4.2.1.70, 5.4.99.12
Use Curated BLAST to search for 4.2.1.70 or 5.4.99.12
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q725K3 at UniProt or InterPro
Protein Sequence (390 amino acids)
>DVU3191 ribosomal large subunit pseudouridine synthase C (TIGR) (Desulfovibrio vulgaris Hildenborough JW710) MPPQAIVVTREEAGQKLLQFLARRFALPQAMLHRWIRSGQVRRNGGRCKPFDRLEMGDEV RVPPFAASMSERADVGPVSANSDAVRNVPDAAAPRPAPSRHDRDGHDAMQPSRQRRPKAD TSLQPARPLPPVVAETPDLFIFDKPAGLAVHPGTGHTDSLTTRLAQHFAKAPFMPTPAHR LDRDTSGLLLVARSYAMLRTLHEAFASHDALVKEYLAWVAGCWQPAAPVTLHDRLSKGAE ASGFERVASDDEGAEAACTVRCLLREQHRSLLLVTLHTGRTHQIRVQLSRRGHPLLGDRK YGGPPRMGGFLLHAVRLCLPSGVVHTLLPRWAGNDALPQGFILPEPLGPVPASAIHADSA CPCPRAPSDRDEGPDRGEADTDTVTEGRDA