Protein Info for DVU3072 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: ABC transporter, permease protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 41 to 64 (24 residues), see Phobius details amino acids 83 to 107 (25 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 171 to 196 (26 residues), see Phobius details amino acids 231 to 253 (23 residues), see Phobius details amino acids 388 to 412 (25 residues), see Phobius details amino acids 446 to 469 (24 residues), see Phobius details amino acids 481 to 501 (21 residues), see Phobius details amino acids 508 to 528 (21 residues), see Phobius details amino acids 557 to 579 (23 residues), see Phobius details amino acids 584 to 605 (22 residues), see Phobius details amino acids 612 to 638 (27 residues), see Phobius details PF00528: BPD_transp_1" amino acids 53 to 256 (204 residues), 45.5 bits, see alignment E=3.7e-16 amino acids 476 to 631 (156 residues), 32.8 bits, see alignment E=2.9e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU3072)

Predicted SEED Role

"ABC transporter, permease protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q726N4 at UniProt or InterPro

Protein Sequence (644 amino acids)

>DVU3072 ABC transporter, permease protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MLTALQSLGIGVPAGSAQGGLSLYGWRTLLHGGAADSLLYGVRVAGLSAAISVVLGMVAA
YGVWRLPRRWQWAGLLPRVPLILPHIAVAWLVVLVCARSGVLSSLSYALGMTAGQGDFPA
LLYGGDGWGMIIAYVWKETPFVMLLVVASLRRLDPRLVEMGRMLGGGRWRTFRAVVLPHV
APVLRVCLVILFLYALGAVEVPFVLGETRPVMPGIAAYNAFFHGDFAGRPAAMALLSALF
VFGVGVVALYAFLEGRCLSGLLTGRVMGRAQDGRLPSDPMQDGYPSGRQQDWRHSGDLLS
SACRWAAMRAASVPDVRGRRWSMGGQWPMARQVSLSRRFLSATGAEGASVPAAGQGGRME
PRASGGTLRTGHGLPHSRFRSQESVRPALVTAALVAVFVLPLLALVVQVAAPVWSWPDLW
PRDFSPRTVLWLMDNGPVVMRHLAWSVWYALLTTGLCLVVCLLPARALAFGLVPSGPLVE
GLLLSPALLPAMGFALGLYGVFVRSGLADTTVAVVLVLAVVSFPYMLRALMVGWQTVGPD
YARCAANLGAGPLRTLLAVELPLLLPAVVAGGSVVFLVAFSDYFLVYLVGGGLVPSFTGF
LFPVLQSGDRSLAALLTLVFMAVPVLLFVLVEGLTLYFMHRRGM