Protein Info for DVU3009 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: radical SAM domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 PF04055: Radical_SAM" amino acids 13 to 149 (137 residues), 52.3 bits, see alignment E=8e-18 PF13186: SPASM" amino acids 227 to 298 (72 residues), 33.2 bits, see alignment E=5.4e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_0363)

Predicted SEED Role

"COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q726U7 at UniProt or InterPro

Protein Sequence (327 amino acids)

>DVU3009 radical SAM domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MTPQPLPRVVNLELTNRCDMGCVFCDHAAMRGTMRMGDMPPERLDAIVDQLLDALAGRRL
PEIGMVGLGEPMLNRHLETHLASLARIAPHCDRVTFNSNLVHLDDAKARLMLGSVATACT
FSVNAPDREHYRRIMGRDLFERVLANLTGFLEVRRRLRPDFPVGVQIMEQQGGEVQKLTA
RIPADLCEGVSFFVRRLYSKPALVDHVAHSDTPDVRPFDVTEARYPCYELYSKVYIDIDG
NLYPCTIGNDCHRAGSGLHIGNVDETPVGALFNGAALAAARARAEADALPFPECAACNIW
ALTPNNFERTHEGRWTLRPDHRRAFGL