Protein Info for DVU2796 in Desulfovibrio vulgaris Hildenborough JW710

Name: b1627
Annotation: NADH:quinone oxidoreductase subunit RnfA (Shelley Haveman)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 36 to 58 (23 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details TIGR01943: electron transport complex, RnfABCDGE type, A subunit" amino acids 1 to 189 (189 residues), 256.3 bits, see alignment E=1.4e-80 PF02508: Rnf-Nqr" amino acids 4 to 189 (186 residues), 194.6 bits, see alignment E=6.9e-62

Best Hits

Swiss-Prot: 56% identical to RNFA_ACEWD: Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit A (rnfA) from Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655 / WB1)

KEGG orthology group: K03617, electron transport complex protein RnfA (inferred from 100% identity to dvu:DVU2796)

MetaCyc: 56% identical to Rnf complex RnfA subunit (Acetobacterium woodii)
TRANS-RXN-276 [EC: 7.2.1.2]

Predicted SEED Role

"Electron transport complex protein RnfA" in subsystem Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.2.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q727Q9 at UniProt or InterPro

Protein Sequence (191 amino acids)

>DVU2796 NADH:quinone oxidoreductase subunit RnfA (Shelley Haveman) (Desulfovibrio vulgaris Hildenborough JW710)
MDVFEIFISAIFVNNIVLAQYLGNCPYLGCSREKGVALGMGAAVVFVIIMATLCTWLIQY
HVLVPFDLAYLQTIVFILVIAGLVQFVEMFLKKMVPPLYAALGIFLPLITTNCAVMGVTI
LVQREEYDLMTSLTYGLASSLGFVLALLLMAGIRERLDTARVPKAMIGTPIALIMAGLMS
LAFMAFKGMTS