Protein Info for DVU2698 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: lipoprotein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 40 to 57 (18 residues), see Phobius details amino acids 97 to 118 (22 residues), see Phobius details PF13272: Holin_2-3" amino acids 15 to 120 (106 residues), 154 bits, see alignment E=7e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2698)

Predicted SEED Role

"phage-related membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q728A6 at UniProt or InterPro

Protein Sequence (120 amino acids)

>DVU2698 lipoprotein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MHIPRSVRAARHARMLWCAFIALLFLLAVGCIAPQQLPVILYKASLILLAAFTGYWIDRW
AFPYARPDSYLVSDWRRQRGFVPCDANDPIARGYARIFAAALVRRAIIMGAAMLAVGLGL