Protein Info for DVU2686 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: peptidase, S24 family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 PF07022: Phage_CI_repr" amino acids 9 to 69 (61 residues), 37.6 bits, see alignment E=2.2e-13 PF00717: Peptidase_S24" amino acids 128 to 253 (126 residues), 75 bits, see alignment E=4.1e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2686)

Predicted SEED Role

"transcriptional regulator, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q728B8 at UniProt or InterPro

Protein Sequence (260 amino acids)

>DVU2686 peptidase, S24 family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MERAKSFEAVLERLMVASGAKNDSDLARILGITPQSVSGARKRGEVPPVWIQSFAEKTGI
SSDWLFFGRQPEAVAMEPVRVGMLRAGDPIARVVTKSESAQEEMTPPLAHAGKAHVIECD
DCEIMMLPMVEARLSAGNGSFETGANIERRYAFRTDFLLRKGQPSHMVLMRVDGDSMEPN
IMNGDVVLIDQSQRDPRAGKVYAVGVEDVVYLKMVNAAPGKIVLSSYNAVYPPLEIDARG
DLSNGIRIIGRAVWVGRELN