Protein Info for DVU2619 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13739: PdaC" amino acids 53 to 130 (78 residues), 41.3 bits, see alignment E=2.9e-14 PF11738: DUF3298" amino acids 149 to 227 (79 residues), 53.4 bits, see alignment E=4e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2619)

Predicted SEED Role

"Flagellar biosynthesis protein FliR" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q728I4 at UniProt or InterPro

Protein Sequence (242 amino acids)

>DVU2619 conserved hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRRFVICLAALALHAMLCFPDVRAFAQPSDQPAQPPAKAAPGQEEGSFNIHDERTDIDVS
YPTFDNAAVTADIRQWAHHLVDAFRAGIEEEQPLPFKSTLKVGYTVSHPSDVALSITFDV
YTYTGGAHGNLDLITLSYDLRDARRLSLENLFADPETALARMSAYAYARLSATLGDMHVE
DMLRSGTTPDVDNYASIALIPGGIRIHFQPYQVAPWAAGPQHVDMPLEDLADAEPRAALW
GR