Protein Info for DVU2614 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 62 to 82 (21 residues), see Phobius details PF13432: TPR_16" amino acids 94 to 155 (62 residues), 31 bits, see alignment E=1.1e-10 amino acids 127 to 188 (62 residues), 23.8 bits, see alignment E=2.1e-08 PF13428: TPR_14" amino acids 122 to 162 (41 residues), 27.8 bits, see alignment 9.5e-10 PF13374: TPR_10" amino acids 127 to 149 (23 residues), 18.7 bits, see alignment (E = 5.7e-07) amino acids 157 to 184 (28 residues), 14.7 bits, see alignment 1e-05 PF14559: TPR_19" amino acids 131 to 187 (57 residues), 28.9 bits, see alignment E=4.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2614)

Predicted SEED Role

"FIG00603510: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q728I9 at UniProt or InterPro

Protein Sequence (205 amino acids)

>DVU2614 hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MHSAWHWQCHHPRQCPCHLQHTPMPRDWSADGAHVRRIPSLTARSTMHNAASLRRLPRPM
PLLLLVAMLTVMLGGCALPRVGVYKDPLTAEEHLKLGLAYEQKGETDLARREYTEAARDV
PQGHLYLANLLFSRGETREAEAHYRKALAGLPDDPTVCNNLAWLLLQENRSLDEAERLAQ
RAVEHATPEQRSSFEDTLKRIRAAR