Protein Info for DVU2580 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: response regulator (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1373 transmembrane" amino acids 43 to 65 (23 residues), see Phobius details amino acids 225 to 245 (21 residues), see Phobius details amino acids 253 to 270 (18 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 318 to 339 (22 residues), see Phobius details amino acids 345 to 363 (19 residues), see Phobius details amino acids 372 to 390 (19 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details PF00072: Response_reg" amino acids 773 to 885 (113 residues), 34.7 bits, see alignment E=8.5e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2580)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q728M3 at UniProt or InterPro

Protein Sequence (1373 amino acids)

>DVU2580 response regulator (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MLYVPGGSDDPPLSFDRQPQRPQGLPATPHMPDLLHLRRPARYAIAALTRIASIVILSCV
LLPAASHAAVRPVSIESLRSVLPLAPFMEYVVDPTGVLTLDEVFSPSHQNGFTPLDAGFP
LRSSGGTWLRMTIAPRPADMPAAQLLLDLGDDLPGTAHIYVPKRPGPAETVEWQEQATEG
RNVFTLPDPLGYPIPIYIKLEGVPGPWFAPQLRTPHNAATAMDRLARPAIVVALGVVMLL
CLLRGITERGEWRIWTSLFTAAALTQAVFGPPATPRGVIDPLALPGVLAPGIALMLLPHV
ARHMLRTRETAPRLDSQYMFLSLPGAALALAPLLPGMAWTARLLPLWPLFMFLLVPTSLA
AVVRRLPGARRFLAGCLAPLAGTSLSMLAIGSPAPAALIASGPMWGLACGALLIAGAGTP
RTRNETDERSGLPGRDARTRRNPAASRPDLLDPLAGEPGLRLITPEEQRSNDIADMAPTA
ADSPLSLDALAPMDTADLSFPDTGGRLVPGQQDTSGRDHAGHAEAGRATPEGPRNVDPAL
LARMEDALRQPMDSLQQALTGLSDCSLPPLARSQAESALDAARKLGVLTGDLRKASHGPK
AIVSRRAVFDLQRSLRDAHDAVEERAEAKNLALSWFMAPHLAQVYEGDAQRVNETLRLLV
ESAVGATDKGSIHLSVRRVPDSTDPGHLLFTVTDTGAGGPPERRSTIALTRAWELVAASN
GTLNVDSGPQGTAVSFSVHLTALSGDLTAPRPAVVEDMDAPAAPAPRPRPLRVLIADDVP
SSRQLLTFYLEGLPHETLEARSTDECVGLYRRAPAGLVVFDGDMPEDDIATAVSDIRAFE
GELGLAPVPLLVLVSHDEQGRRLLQTGCSEALAKPITRTSLRETVLRLAPLPVQGVAATG
ADVASTEAEGSDAPSPAENRAQADTPHEMASLPPDLPTLSLDGTPERAGSLATGGMTASG
TGLAPSPTDASPLTLASASGMDPMHEGHPSTVAHVDDGPLHMEGAPAPAPDIFATLDSTD
FTSPAAPDSHQAQPSGMAEERGEVDGESWYPWDRPAQAPKPRPADEQKPEGTAKLPDLFG
EATPAGSSQADDLPLLDLIITDPEQDAEDDVPATPSKKAERLAPLPEEPGTAFSGEQPAP
ASPPVADTGHEHAAAASPHAAPHRHDEPQAHQRPEDDGLAAHDSPASDETEVAEADDSGR
PGYDLSALARASANLSAAVRASAIAEEAARTVTHTGKPASADAHASDDRATASDSDAGQS
KPLLSAHGELLDASLAPLVPGLVTTLEAALEDALIGRDQDDTLAVEEASCRIAGKAETFG
LRVLERIARCVERAAAADDIEAVRDLLPELQAAVERNTLALRAAPHATKGTDR