Protein Info for DVU2484 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: cytochrome c family protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 transmembrane" amino acids 15 to 41 (27 residues), see Phobius details amino acids 63 to 86 (24 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 135 to 158 (24 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 256 to 275 (20 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 355 to 421 (67 residues), 35.5 bits, see alignment E=5.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_0759)

Predicted SEED Role

"Cytochrome c family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q728W8 at UniProt or InterPro

Protein Sequence (430 amino acids)

>DVU2484 cytochrome c family protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MDYPVWQLWGINGGLLVAIISVLHVFVAQFAVGGGFLLVHAATRAERAGSAEATFWVKRF
TRFFLLLSMVFGGVSGVGIWVIISLISPAATSLLVHRFVYAWATEWVFFLGEIVALLVYY
YGFGKMRFEDHRNVGLLYGLFAYLSLFMINGIITFMLTPGAWMQTQGFWDGFFNPTFWPS
LLFRSALCAMLSGLFGLVWASLIDDERARELMTGVTRLWALVPIPFMAVGAWWYLGALPA
PQLEMVLRRTADIRPFLEAFPWVLAALMVGGLAFFTRLPSGARVPVAALLLVLGLCQVGT
FEWVRETGRRPWIVHGVIWSNGITPEAGAKSDLEGMLKVARWSGVKQVAEANMHEAGREL
WQVQCANCHGLGAPMIDILPRIANRPLTGVEALITGQGALQGYMPPFVGTPAERRALATY
LVNERDARRH