Protein Info for DVU2483 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: cytochrome c family protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 581 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details PF02085: Cytochrom_CIII" amino acids 486 to 575 (90 residues), 56.6 bits, see alignment E=4.4e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2483)

Predicted SEED Role

"Tetraheme cytochrome c isozyme 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q728W9 at UniProt or InterPro

Protein Sequence (581 amino acids)

>DVU2483 cytochrome c family protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MPSKQSPRLTAFYYFAWLVAVVALLGIFAAGGLERPARTTGETPAAKAPAASAAAPSPYM
PVTSIPPFDADRADYILLAWSTQGMQMVTDAEPRWTMLPPEAALRAQLVRRGPGPAPVTE
GVRITWRVEREHATLEGAPVSGAAGEMKLEQGGSTFAADGIGIMPYRASGGFNAYPTVTV
EAHDDEGRLLARTAAVLPVSTEVGCRNCHGGAWKRDGLAGISPATADDVLTVHDRINGTD
LVAQAAKAPVECRSCHSGAPEAPAPSLSAALHGWHANYMTDGGAETCASCHPSSPQGATR
FMRGLHKAKALDCTRCHGAMEDHALSLLRWEEKAGRKSAARLARELKPRAVSAVDDINPR
APWAMEPDCTGCHDFAQKPATATASAFNKWTASEKDRFSARADDMGNLRCPTCHGAAHAE
YPAENPFGRDLDNMPPIQYQQHAKVMGGGNNCSVCHREPLPMEASAHHPVVIRKTIPITL
PAGTVLTKPAVLFPHDTHGSMDCGTCHHKGYQEGKQTCATKGCHDRPRPDTIEGLGEVGY
FRNAFHGKERGCMTCHLALREKGKAAGPVGCRDCHTPGNNQ