Protein Info for DVU2387 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: ABC transporter, ATP-binding protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 PF00005: ABC_tran" amino acids 30 to 189 (160 residues), 110.2 bits, see alignment E=3.4e-35 amino acids 312 to 465 (154 residues), 114.8 bits, see alignment E=1.2e-36

Best Hits

Swiss-Prot: 49% identical to YEJF_ECOLI: Uncharacterized ABC transporter ATP-binding protein YejF (yejF) from Escherichia coli (strain K12)

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 100% identity to dvu:DVU2387)

MetaCyc: 49% identical to putative oligopeptide ABC transporter ATP binding subunit YejF (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q729G4 at UniProt or InterPro

Protein Sequence (592 amino acids)

>DVU2387 ABC transporter, ATP-binding protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MTHDLLHIEDLHLAFGGSAHPPAASGRAVLHGVGLTMRRGEIHALVGASGSGKSLTARAV
LGLLPPGARLTHGNIRFEGAQLAHAPESALRALRGDRIGMVFQDPLSSLNPLHTIERQVA
EPLAIHKGIRGPRARARALELLDMVGLDEPEARLASYPHQLSGGQRQRVALAMALANDPA
LLIADEPTTALDTTVQSQILRLIDTLRHRLGMGVLIVSHDLGVVRSLADVIHVMDAGCIV
ESAPTTRIFSAPASPVTRALLGAEGPSGPAPLPETTATQPALLEARDMGVTFTRQRGLFG
LRKTGHDALVSASFTLRRGECLGVVGESGSGKSTLALAVLRLIASRGRVTLDGQRLDTLD
EEALRPLRRKVQAVFQDPFSALNPRMTVAESIAEGLTTHFPDLRGRQGLKAMHDKTLAAL
DEVGLSDDFMQRYPGELSGGQCQRVVIARALALRPEVLVLDEPTSSLDRALQFQVVALLR
DLQLRHGMACLFITHDLSLVRSFCHRVMVLHRGHVVEAGPTPVVLDAPATATTRALVEAA
LGCAPASASGLSAATAEPTGLMVGRPRFAEMTPAHDAATPSNRRPRSDAAGA