Protein Info for DVU2335 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 516 transmembrane" amino acids 47 to 69 (23 residues), see Phobius details PF04748: Polysacc_deac_2" amino acids 296 to 507 (212 residues), 263.5 bits, see alignment E=5e-83

Best Hits

KEGG orthology group: K09798, hypothetical protein (inferred from 100% identity to dvu:DVU2335)

Predicted SEED Role

"Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q729L5 at UniProt or InterPro

Protein Sequence (516 amino acids)

>DVU2335 conserved domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MAAKRPQKKSSTAKGDGTSGRSRGSGTKSGTRKGSKTPAATEKTLTRLVIVIMGVLCLVF
TVMAGYWLWQGGADATRPVPPSKTERQKTPAATSPARPTPAQPSATAGKVQSGEASRTTG
KGVHADAQSDASTPGGDADKAAPSVPRNATSDAVDGEGAVRAPVNAGALPYEESLDAPLE
EGVKQVDYALVQTLVRLGIARERLRIASVETRNEQGESYHFQQMTLGVGDAPDRFVKAFV
EALSVWAERAQMRKKADDLIEVYVGGVLTHEITLSLYESVEEPRPGTPVEGALLAIVIDD
IGESMGAVRDLLKLDYPVTFAVWPRSSHAREAAEAAHRAGREVMIHQPMEPLKYPSVKPG
PGAIYVRMGSDEIEATLRDNLARVPHAVGLNNHMGSRFTQDTRGVRAVCDALEGKGLFVL
DSVTHSGSVFYREARKAGLPAGKRNVFLDVIHDKRNIMFQLDKAARVAHEQGVAVAIGHP
LAETVAALKEWQRTRDKSVRIVTMRQLLDAETTARR