Protein Info for DVU2085 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: Snf2 family protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1071 PF08455: SNF2_assoc" amino acids 210 to 595 (386 residues), 105.1 bits, see alignment E=8.4e-34 PF04851: ResIII" amino acids 608 to 763 (156 residues), 41.9 bits, see alignment E=2e-14 PF00176: SNF2-rel_dom" amino acids 612 to 890 (279 residues), 253.8 bits, see alignment E=3.9e-79 PF00271: Helicase_C" amino acids 906 to 1016 (111 residues), 80.3 bits, see alignment E=2.6e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2085)

Predicted SEED Role

"SNF2/helicase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72AB2 at UniProt or InterPro

Protein Sequence (1071 amino acids)

>DVU2085 Snf2 family protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MDRSEEQAIRTLLQGFVHDTIPEYIRDGAQDMLAQGGVQKLGLKKEGGTWEIDGSIQSDD
FQIYVSRISLTPSEHRASYVCNCSDSFSGVCRHVAATALKMLSTFDTRPGSDEPAKPRVE
WRQSFRSFFSTALDPEPGKHYLIFRFHPEPGRLTVAFFRARQNKSGLSTVHNEITLEQII
NNPEWCELSPQLVDVAKQVGQFVDYYGHRIEIPDGLVSWFFWAIRREYYLFWLDTESPCR
IENTALGLKLHPRLGDDGLSFDVMLYREGKPPFSILGGENAATFHGQMPMWVCWNRSFYP
VQTSLPPQLVQDLIRQHPSIPQEDMSEFLDRVWTRLPSSDLYGQEDFLKLMEPVFQPARY
SPKLFLDEEGSLLTLEIQNVYETAHGEFYLAGPNPDFQTGSYTFEGTTFLIRRHQDEEAG
LITQLSEMRFQPRSSRLWFLEPEEAIAFLLDAYPRLVEKYRVYGEKALSRYKVRLSQPVI
TAKVESNEEEKWFSLDIDVEYDGQKVPIDKIWKAWSQGKRYVQLKDGSYTSLPETWLERL
GHKLQALGLDPDKPPQKQFKQFEAPVLDSLLDDLPGAETDSFWNSLRDKIRTFREIRAVN
APRGLNATLRGYQMQGLAYLNFLREYGFGGILADEMGLGKTVQTLSFVQHMVESGKIGPN
LIVVPTSVLPNWEREAQKFVPELKRLIIYGTRREGMFKLIDESDLVVTTYALLRRDLEEL
QNHTFNCIILDEAQNIKNPNTITARSVRRIKADMRLCLSGTPIENNLFELWSLFEFLMPG
FLGSQHAFQRGVIKPIKDGDCETLDYLRTRVRPFILRRTKSEVAKDLPPKIENTYYCALA
EEQAELYTALARKLKEQVLADVDEKGLAKSQMSILDALLKLRQICCHPRLLKLDMPGFST
NLPSGKFDAFKDMITDIVEEGHKVLVFSQFVQMLHIIRSWLQISGTPFCYLDGTSKDRFE
QVDKFNNSPDIPIFLISLKAGGTGLNLTSADYVIHYDPWWNPAVESQATDRTHRIGQTRQ
VFSYKLICQNTVEEKILKLQDMKRGVAEAIIPGQETWKSLTREDLEMLFDI