Protein Info for DVU1979 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: ABC transporter, ATP-binding protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 641 PF00005: ABC_tran" amino acids 19 to 178 (160 residues), 70.9 bits, see alignment E=7e-23 amino acids 329 to 463 (135 residues), 85.9 bits, see alignment E=1.7e-27 PF12848: ABC_tran_Xtn" amino acids 217 to 292 (76 residues), 38.9 bits, see alignment E=3e-13 PF16326: ABC_tran_CTD" amino acids 555 to 630 (76 residues), 52.4 bits, see alignment E=2.1e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1979)

Predicted SEED Role

"COG0488: ATPase components of ABC transporters with duplicated ATPase domains" in subsystem Folate Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72AL3 at UniProt or InterPro

Protein Sequence (641 amino acids)

>DVU1979 ABC transporter, ATP-binding protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MALLSLQNITLNLGGRPLLDGATLHVEAGERLCLVGRNGAGKSTLLRLMAGDLRPDAGEV
VRAQGTRFGHMPQDVPAHLSGSVYEVVAEGMGPDGVALAAYHRLETGHADSGTLDAARHH
LDTGNGWERHGDMMTVLNHLHLDPDARFEELSGGLKRRALLARALVSSSDVLLDEPTNHL
DIEAISWLEDFLQRRARTLVFVTHDRTFLRHLATRIVELDRGQLFAYDCGYDAYLERREE
RLENETRQNALFDKKLAQEEAWIRQGVKARRTRNMGRVRALQALRSERAERRERMGTAAM
RVHEAERSGKLVIEATGVTFAHGDSEPVLRDVDVCIQRGDRVGLIGPNGAGKTTLLRILL
GDLEPQQGRVRHGTRLEVAYFDQMREALDIDANAMDNVANGNDRVTVNGVNRHVAGYLRE
FLFDDDRMRIAVRHLSGGERNRLLLARLFLRPSNVLVLDEPTNDLDVETLELLEELLTDY
SGTVLLVSHDRTFLDNVVTSTIALEGQGIVREYIGGYEDWLRQRDEPQRPAREARDVATA
TQPAERRAVDTRPRKLTFKEQRELAEARDELEQLPARLEALETEQAVLERRLADPASFGS
DMSALTETGERLASLEEQQLTLLERWEELEARIAELEMCRS