Protein Info for DVU1967 in Desulfovibrio vulgaris Hildenborough JW710

Name: rrf2
Annotation: transcriptional regulator, rrf2 protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 TIGR00738: Rrf2 family protein" amino acids 1 to 130 (130 residues), 119.1 bits, see alignment E=6.3e-39 PF02082: Rrf2" amino acids 3 to 131 (129 residues), 116.6 bits, see alignment E=9e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1967)

Predicted SEED Role

"Rrf2 family transcriptional regulator" in subsystem Flagellar motility or Rrf2 family transcriptional regulators

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72AM5 at UniProt or InterPro

Protein Sequence (173 amino acids)

>DVU1967 transcriptional regulator, rrf2 protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRISSTVHYASRLLVNLAQHTPAAGPVSASELADRTGISVKFIEKIIRQLRTAGMVRSVR
GATGGHLLSMRPEDVTLGDVLRVVEGGVQPPNCCVGDDCEDTPCRCKTAWISAAKALEAT
LDQYTLADIMSTQPTANERSTKRPAARMSNPQYDRTTPGTPYAHGRSCAHQSQ