Protein Info for DVU1781 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 PF02589: LUD_dom" amino acids 46 to 220 (175 residues), 125.1 bits, see alignment E=1.4e-40

Best Hits

KEGG orthology group: K00782, hypothetical protein (inferred from 100% identity to dvl:Dvul_1377)

Predicted SEED Role

"Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG" in subsystem Lactate utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72B57 at UniProt or InterPro

Protein Sequence (221 amino acids)

>DVU1781 conserved hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSSTTTSRERILGRLHAACARAAMPLPGCGDVWQAADIPVEERIPLLKKRMETVRAEVHV
MPEAEWPNRLAGKLSERDVKTLAYGPEAWFGAALRKKFKGKAAPSLVPYEGDVEAFRDTL
FDTDAGITGTLGGIAENGTLILWPDAVEPRLLSLVPSIHIALLKADSIHATFASALRDMG
WAKNMPTNALLISGPSKTADIEMTLAFGVHGPRELIVLVLE