Protein Info for DVU1562 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: HAMP domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 964 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 346 to 366 (21 residues), see Phobius details PF13487: HD_5" amino acids 788 to 928 (141 residues), 171 bits, see alignment E=2.1e-54

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1562)

Predicted SEED Role

"Chemotactic transducer-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72BS2 at UniProt or InterPro

Protein Sequence (964 amino acids)

>DVU1562 HAMP domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSRPSFRLQHLIVAAGFLILALAGLFTTGMYFMRSDKTITEARNSIFTPTMGEAHARLDL
LFTPADTTLQLVTIHSEKPYFLKTDATTIPTSLTKTLDSARFITSIYTGYDDGQYFMILR
SNKQDDLHKMAPDDTAYILHTVTIEEHDYKRLLRFFDKDLNLIKTSDISDRAPVFDPRER
PWYGTATQDDALHVTMPYRFASSGEFGISLSRRLQNLDGVAGADINLESLIGALATLKPT
PEASIALIDATGNILACSDAKGLARRSEQHPLSCGPLSKATADELVMAGKTAPQSPRFRR
IVTDDGAWVAGGESLPELGANGVSMVLAVPEDALVAGLRTTRNDTLLLLAGGFILLLPAL
FYGAHLVTSPLQCVAREAERGRKFDFTAGESTHSVVTEINDLALSVDHMQHTIRKFMQLA
KSVSRIRDFDRLVPLLTQEMQQATATQAVLLYMPDKDHTLHLWSGCGIGGECLGHDESEA
LPPTTVVPQGKIPIRTGGLPPEDACHRHISTLLNGTDAQHQHWFAAVTLRDKRDAVLGEL
LVIDQVPFSQERLAFLRATSGVVEVALDNDRMVKTQKELFSAFIRLLAQAIDAKSPYTGG
HCTRVPILSRLLAEAASDTRQGAYASFGMTNESWEELYLASWLHDCGKVTTPEFVVDKAT
KLETIHNRIHEIRTRFEVIKRDAHIAYWKGVSEEGDRAALQKTLQDELRTLDDDFAFVAA
CNTGEAPVDDAARQRLRNIAERTWERTLDDTLGISWAERERKEPDHPLPPVMEKLLCDSS
AFVVKPDAVSQETEDRWGFDMPRPEVLYDRGELHNLSIPWGTLTSEERYKINEHIIQTIM
MLSELPFPAHLENVPEIAGGHHERMDGTGYPRRIKGELLHPLARIMAVADIFEALTAPDR
PYKKAKTLSQAMNIMVGMAKSGHIDRELLCIFIREEVYRAYAENHLPEWQRDAVDAEALL
RDLG