Protein Info for DVU1552 in Desulfovibrio vulgaris Hildenborough JW710

Name: b2875
Annotation: conserved hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 PF02625: XdhC_CoxI" amino acids 12 to 68 (57 residues), 67.9 bits, see alignment E=6e-23 PF13478: XdhC_C" amino acids 227 to 369 (143 residues), 161.3 bits, see alignment E=1.5e-51

Best Hits

KEGG orthology group: K07402, xanthine dehydrogenase accessory factor (inferred from 100% identity to dvu:DVU1552)

Predicted SEED Role

"Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72BT2 at UniProt or InterPro

Protein Sequence (376 amino acids)

>DVU1552 conserved hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSTFLESLRDILSAGESIAMATIANHSGSTPRGDGAQMVIRPDGSILGTIGGGLVEARCI
EAGRDLLQRPPGSALFCAFALDNTTAAEAAMVCGGHLTVIIEHAGACHDNVNGCHTGEQT
GCSAGHGKGLADILLHACDRVADGLSASFGVEYVWDSPSGQDGANALDKADISGRATTRQ
TFRPMRAAVHTTGEDSDGQRLSGASTGLALSESGCRLDVMLVPPPRLVIFGAGHVAVPTA
HFGHAVGFSVTVIDDRPDFATPERFPDAHLRIPPSFAEAFDGLHVTPDTYLVIMTRGHLH
DGEILEQALKTPARYIGMIGSRRKRDALYAELQEQGLDDATLARCHCPIGLDIQAQTPEE
IGISIMAELVMHRASA