Protein Info for DVU1432 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: radical SAM domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 864 TIGR03960: radical SAM family uncharacterized protein" amino acids 3 to 597 (595 residues), 693.8 bits, see alignment E=2e-212 PF19864: Radical_SAM_N2" amino acids 49 to 202 (154 residues), 180.4 bits, see alignment E=2.4e-57 PF04055: Radical_SAM" amino acids 255 to 419 (165 residues), 59.5 bits, see alignment E=7.5e-20 TIGR03936: radical SAM-linked protein" amino acids 656 to 859 (204 residues), 191.6 bits, see alignment E=1.4e-60 PF10105: DUF2344" amino acids 657 to 822 (166 residues), 136.9 bits, see alignment E=1.1e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1432)

Predicted SEED Role

"FIG092679: Fe-S oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72C52 at UniProt or InterPro

Protein Sequence (864 amino acids)

>DVU1432 radical SAM domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRELLSLLPKPSRYTGIEEGSVHKRREDVAIHCALAFPDMYEVGMSYLGQKILYGILNDR
EDIWAERVFTPCREAGAILRSHNAPLSTLESDTPLAALHLVGFSITHELCYTNILYMLDL
AGIPLRSADRGDDLAAWPIIMAGGGCTLAAEPMAPFLDLMVLGEGEEVQVEIIDLLAKAR
SEGWSRTRYLEAASSIPGVYVPAFFADDAQGATPAPLRQGYDKVVRRIIADMDNARYPAA
QLVPFGAVHNRLALEIGRGCTRGCRFCQAGMTYRPARERSVPNLQALLEDCLARTGYDDV
SFLSLSTGDFSALKTLFMQTVDRCAEEQVSVSLPSLRVGSIDDDIMRRMAGIRRTGATLA
PEAGSQRLRDVINKGVTEEGLMLHVRKLFEHGWQQVKLYFMLGLPTETYEDLDAIVDLCR
KVRDAAGRGVRRLQVTAAVSPFVPKPHTPFQWEAQISLEEIRARVGYLRDAFRREKGLKL
RWHEPEMSFLEGIFSRGDRRLAPVVESAFRKGAIFSSWMEGFDLAPWLEAMNEHGLSPDE
YTCARDIDAPLAWAHLDSGVSREFLLRERERALSLKTTPDCRYSGCRVCGVCDTKAGPSR
LDRLPGVEAYANRLNFEQRDQQSHEPTLDDNGQVVRHEAPNRPPKLSGDLVHKASQYRIW
YTKEDMAVFLSQLELQTIFERALRRAGLPPAFSQGFHPLPLLSFGRALPVGVASRAEWFT
IILRERFTADEVRQRLEGRLPKGMRVTFVEEQLPSKRHPQPVVEVFTLRYLAPEEMQPTF
IDAWRTFAACEAFEWTRDTKKGQRTGDIRPLFRDITFEDDGSLTLRLDWTDFYMSPLALA
RAVFPEAAINELAMTKLEQHFEPA