Protein Info for DVU1413 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 27 to 254 (228 residues), 127 bits, see alignment E=1.4e-40 PF13433: Peripla_BP_5" amino acids 29 to 113 (85 residues), 31 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1413)

Predicted SEED Role

"ABC-type branched-chain amino acid transport systems, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72C71 at UniProt or InterPro

Protein Sequence (430 amino acids)

>DVU1413 conserved hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRFFVATVYLVILAVFPFPVMASGYEPVRLGMSAALTGPTAALGLSYLAGVRAGFAEVNE
AGGVGGRKIQLVALDDGYDPDRVIHNYIRLVEEERVDQLFGFTGTPTVTRVLPLLVHGRS
AASAMLFPLTGAYPLSLEPQASHIFSLRASYADEIDAVVERLVGVGVRRFAIAYQADAYG
REGWHDLRQSLRRYGLDMVADAAFQRNGVLRVEDISVQSGILVDAHPEAVLCMGTDVSCA
ALACNLRNVGFVGPIIMPSFVVNRGFKDRFNALCPVTLPDNLLFCEVMPEYGASPADRAG
DGASPSCALAAAFEAAMARYAVGAPAGDREAQPDGVHSGTVSSHASKLDEVAFEGYLAAR
AAVLLFGEAAPRTDLEALRAAWTRLGGARGVFSRFCTQFQGHDEARPYVRFVTIEGADEK
TVDDFERWRR