Protein Info for DVU1364 in Desulfovibrio vulgaris Hildenborough JW710

Name: rfbB
Annotation: dTDP-glucose 4,6-dehydratase (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF04321: RmlD_sub_bind
  • amino acids 1 to 273 (273 residues), 72.7 bits, E=8.7e-24
• TIGR01181: dTDP-glucose 4,6-dehydratase
  • amino acids 2 to 321 (320 residues), 454.3 bits, E=1e-140
• PF02719: Polysacc_synt_2
  • amino acids 3 to 266 (264 residues), 67.3 bits, E=4.1e-22
• PF01370: Epimerase
  • amino acids 4 to 245 (242 residues), 223 bits, E=1.2e-69
• PF01073: 3Beta_HSD
  • amino acids 4 to 233 (230 residues), 67.4 bits, E=3.2e-22
• PF16363: GDP_Man_Dehyd
  • amino acids 4 to 307 (304 residues), 266.7 bits, E=1.1e-82
• PF07993: NAD_binding_4
  • amino acids 76 to 182 (107 residues), 31.9 bits, E=2.4e-11

Best Hits

Swiss-Prot: 52% identical to RMLB_ACTS5: dTDP-glucose 4,6-dehydratase (acbB) from Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110)

KEGG orthology group: K01710, dTDP-glucose 4,6-dehydratase [EC: 4.2.1.46] (inferred from 100% identity to dvu:DVU1364)

MetaCyc: 53% identical to dTDP-glucose 4,6-dehydratase monomer (Streptomyces sp. KCTC 0041BP)
dTDP-glucose 4,6-dehydratase. [EC: 4.2.1.46]

Predicted SEED Role

"dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)" in subsystem Rhamnose containing glycans or dTDP-rhamnose synthesis or linker unit-arabinogalactan synthesis (EC 4.2.1.46)

MetaCyc Pathways

• O-antigen building blocks biosynthesis (E. coli) (10/11 steps found)
• dTDP-β-L-rhamnose biosynthesis (5/5 steps found)
• dTDP-4-O-demethyl-β-L-noviose biosynthesis (3/5 steps found)
• dTDP-β-D-fucofuranose biosynthesis (2/4 steps found)
• dTDP-6-deoxy-α-D-allose biosynthesis (2/4 steps found)
• dTDP-N-acetylthomosamine biosynthesis (2/4 steps found)
• dTDP-N-acetylviosamine biosynthesis (2/4 steps found)
• dTDP-L-daunosamine biosynthesis (3/6 steps found)
• dTDP-sibirosamine biosynthesis (3/6 steps found)
• dTDP-α-D-mycaminose biosynthesis (2/5 steps found)
• dTDP-3-acetamido-α-D-fucose biosynthesis (2/5 steps found)
• dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis (2/5 steps found)
• dTDP-β-L-digitoxose biosynthesis (3/7 steps found)
• dTDP-β-L-olivose biosynthesis (3/7 steps found)
• dTDP-α-D-ravidosamine and dTDP-4-acetyl-α-D-ravidosamine biosynthesis (2/6 steps found)
• dTDP-D-desosamine biosynthesis (2/6 steps found)
• dTDP-β-L-4-epi-vancosamine biosynthesis (3/8 steps found)
• dTDP-β-L-megosamine biosynthesis (3/8 steps found)
• dTDP-β-L-mycarose biosynthesis (2/7 steps found)
• dTDP-α-D-forosamine biosynthesis (3/9 steps found)
• dTDP-α-D-olivose, dTDP-α-D-oliose and dTDP-α-D-mycarose biosynthesis (3/9 steps found)
• superpathway of enterobacterial common antigen biosynthesis (2/10 steps found)
• superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis (5/19 steps found)
• superpathway of novobiocin biosynthesis (4/19 steps found)
• superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis (13/33 steps found)
• superpathway of erythromycin biosynthesis (2/19 steps found)
• superpathway of megalomicin A biosynthesis (3/22 steps found)
• superpathway of dTDP-glucose-derived antibiotic building blocks biosynthesis (3/23 steps found)

KEGG Metabolic Maps

• Biosynthesis of vancomycin group antibiotics
• Polyketide sugar unit biosynthesis
• Streptomycin biosynthesis

Isozymes

Compare fitness of predicted isozymes for: 4.2.1.46

Use Curated BLAST to search for 4.2.1.46

Sequence Analysis Tools

See Q72CB9 at UniProt or InterPro

Protein Sequence (340 amino acids)

>DVU1364 dTDP-glucose 4,6-dehydratase (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRLLVTGGCGFIGTNFIRHVLAVRPEVSVVNFDKLTYAGNPANLTDIEGEHGGNRYSFEH
GDIADAGRVRDILERHAIDAIVNFAAETHVDRSINDSTPFITTNVLGTQVLLQAALDRGI
PRFVHISTDEVYGTLGPEGLFREDTPLAPNSPYSASKAGADLMVRAFHETYGLDTVTTRC
SNNYGPYQFPEKLIPLMYRKATAGEPLPVYGDGGNVRDWIHVEDHCRGVLLALEKGRPGG
VYNFGGASERTNLDVVRLILKLTGRSEELIRFVKDRPGHDRRYAMDFTLAARELGYAPEH
SFENGLAATVDWYRANDAWLASVESGAYREFMDRWYGDRR