Protein Info for DVU1318 in Desulfovibrio vulgaris Hildenborough JW710

Name: rplF
Annotation: ribosomal protein L6 (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 TIGR03654: ribosomal protein uL6" amino acids 2 to 175 (174 residues), 224.9 bits, see alignment E=2.9e-71 PF00347: Ribosomal_L6" amino acids 11 to 82 (72 residues), 48 bits, see alignment E=8.9e-17 amino acids 90 to 163 (74 residues), 66.4 bits, see alignment E=1.6e-22

Best Hits

Swiss-Prot: 100% identical to RL6_DESVV: 50S ribosomal protein L6 (rplF) from Desulfovibrio vulgaris subsp. vulgaris (strain DP4)

KEGG orthology group: K02933, large subunit ribosomal protein L6 (inferred from 100% identity to dvl:Dvul_1750)

Predicted SEED Role

"LSU ribosomal protein L6p (L9e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72CG5 at UniProt or InterPro

Protein Sequence (179 amino acids)

>DVU1318 ribosomal protein L6 (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSRIGKQPIPIPSGVEVKIGNDVVEVKGPKGALTTPVCSVLSYEVTDGKVVITRLDETRQ
TRAQHGLRRTLLANCIEGVSKGFSKTLEVVGVGYKVAVKGDVVDLSVGYSHPVLIDLPAG
ISAKAEGNKLTISGVDKELVGEVAAQMRRVRKPEPYKGKGIKYDNEQIRRKAGKSGGKK