Protein Info for DVU1261 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 586 transmembrane" amino acids 315 to 334 (20 residues), see Phobius details PF13401: AAA_22" amino acids 77 to 210 (134 residues), 73.5 bits, see alignment E=3.2e-24 PF05489: Phage_tail_X" amino acids 445 to 493 (49 residues), 31.3 bits, see alignment 1.9e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1261)

Predicted SEED Role

"General secretion pathway protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72CM2 at UniProt or InterPro

Protein Sequence (586 amino acids)

>DVU1261 conserved domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MDEDRYQLRCGLSPPCAWTRPVHATNRNTPRETSMQYLEMLGLAQEPFSTSPDPLAYYRA
PEHEHCLHRLEVSIRLKRGLNVVIGDVGTGKSTLSRCLLRALDGQEDIIPHLILDPGFES
ADEFARYICRLLADGPVPDTLPRRDCIEAIQNALFSLAVERGRIVLLCIDEGQKLAPDCL
EVLRELLNYETNTEKLLQIVIFGQRELEEVIDGLPNFKDRINEYLVLRPLDRRETIRLVR
HRLRLAGGPAGERLFTLGALLAVHRATRGYPRRIMRLCHQLVMTLLITNKPRITARSVRD
FLQRDKALGPKRTPYLRLIGATGVAAALVALFVMRPAQVEQTLTTMTGPVFSNIRATLAP
HPALSGTTGLTEGQHQALPNDAAPFVPKSEQNGRNTPQEARGMASDQPVASIESGTNGID
GLETATSASSVTPPERLGALVLPRGETMLRLLETVYGRAGGVLDKVLEANPGITNPNMLP
TGTILTLPALPLTRGEAVNGLSLAVLSRHDSLETAYATYRSTANRQDLMVVPVWMPRNGL
TFMVALEKRDATEKDVRTMTRSGKRDAAPFLLRNLPPETIIYRRIP