Protein Info for DVU1087 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 TIGR04357: CofD-related protein, GAK system" amino acids 20 to 324 (305 residues), 455.3 bits, see alignment E=9.9e-141 PF01933: CofD" amino acids 25 to 322 (298 residues), 114.6 bits, see alignment E=2.5e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1087)

Predicted SEED Role

"FIG00603085: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72D43 at UniProt or InterPro

Protein Sequence (326 amino acids)

>DVU1087 conserved hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MPFPSIPHPFESDETPPELGPRLLFFTGGTALRGLSRELIDHTHNSVHLVTPFDSGGSSA
MLRSCIAMPAVGDLRNRLLALADRRVVPSSVLDICNMRLPRDGDRQALLQTLYGMASARD
AVWRGVPRVFGEALRVHLRYFLEQMPEAFDPRGASLGNLIMAGGFLHHGRRLEPVLLFLS
RLLRVRGVVLPTVHEDLHLMAELADGSVIVGQHRITGKDAPAIASPIRRLAITRRLPAAG
AETVEEYRSPLSPLAATYIATADLICYPMGSFWTSVVANLLPVGVGGCVAQADCPKVYIP
NVGDDPEQLGMSVAAAVAVLLATLPA