Protein Info for DVU1000 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: peptidase, M24 family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 PF01321: Creatinase_N" amino acids 16 to 143 (128 residues), 53.5 bits, see alignment E=3.6e-18 PF00557: Peptidase_M24" amino acids 151 to 390 (240 residues), 136.8 bits, see alignment E=9.2e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1000)

Predicted SEED Role

"peptidase, M24 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72DC9 at UniProt or InterPro

Protein Sequence (407 amino acids)

>DVU1000 peptidase, M24 family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MFTAAERIPDDEVRRRHSRCRAALADVAPEASGLLVFARLSIYYLTGSLGNGVLWLPREG
EAMLFVRKGIERVLLESPIERVHPFRSYGDIVELAREAGSPLGGVVAAEMGGLPWSLANL
LQQRLQGVSFVPGDMAVTLARAVKSPWELNKMRLAGARHHESLHEALPQRIHPGMTEREV
SHLAWQVFFERGHSGMMRMSANGEEIFLGHVAAGENGNYPSHFNGPLGLKGEHPAVPYMG
YAGSVWRRGTPLAVDIGFTLEGYHTDKTQVYWAGPRASIPDAVLRAHETCMEVQARAAAA
LRPGAIPSAIYQDALQLVGEYGLSEGFMGIGSNKVPFLGHGIGLAVDEHPVLARRFDAPL
QTGMVIAIEPKMGIPGVGMVGVENTFEVTEDGGRCLTGDEYDIVCIE