Protein Info for DVU0972 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: HD domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 PF01966: HD" amino acids 26 to 135 (110 residues), 32 bits, see alignment E=2e-11 amino acids 228 to 348 (121 residues), 60.4 bits, see alignment E=3.1e-20 PF13487: HD_5" amino acids 216 to 380 (165 residues), 110.1 bits, see alignment E=1.6e-35 PF08668: HDOD" amino acids 229 to 268 (40 residues), 26.2 bits, see alignment 7.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_2016)

Predicted SEED Role

"HDIG domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72DF7 at UniProt or InterPro

Protein Sequence (421 amino acids)

>DVU0972 HD domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MTLQVRLIDLVVAFSRALDHVSRAVSDHHIHVGYFAARLGERLGLDARDRCELLLSALLH
DVGAISLKTGLDGLLFEQNADAHARAGWALIGTCPRLAAAGEVVLHHHAAWEDVADDLDR
AKRLGAIVHLADRLDVQLRRSEPLAPQLTRAFTKLEPGRGRLFSPEHLDALRDMLDDPQV
REGVEDPSVGLHSGPGARLEEEILDTEGVISFSNLFSLVIDSRSPFTATHSSGVAETARL
LAMRAGLGHDVAQKVFVAGLLHDIGKLGVPLSILEKPGPLDAAEMCEMQLHAGRSKTILD
AVPGFDEVSRWGALHHERLDGSGYPFGLRGDELEVPSRIIAVADVFTAIAEDRPYRRGMP
LETACGVLRGQVRDGLLDGDLAGLLLNDIDEADCARRKAQARARSSFDEAYDICTRNSED
A