Protein Info for DVU0810 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 686 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 376 to 649 (274 residues), 35.9 bits, see alignment E=3.5e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU0810)

Predicted SEED Role

"Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72DW9 at UniProt or InterPro

Protein Sequence (686 amino acids)

>DVU0810 hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MASQAFFLQRCPMNTMPHAMSTATRPAGRRPAVVLMLALALSLTACGQRKSIVFPPTSQT
RPVPATPATPVSPGVPLQQQAAEAWKKGDMPAAERAYGLLANTPGLPEEQQREAWRYHAA
AAAANRHPHVALDSLQRWRALQPGADGTAEWQDTWYAAIGQLPREDAIRRAGAVYGDTSR
PWALRAQAGLLLATRQWEHDAPAASLKTLSDLYAQATPTWRAALENRLYDEMARTDPATM
QKLRAAVTPENEGNYPYNVILLEQARRLVAAPGGGGSAADVLARLQRSAKFEDPQLLGSL
LSSGGDTAPARCVALALPMSGPFGAIGWKVARGASSAQWELARSGQDTEVRVLNTESADW
LSQLEALPATCAVVGGPLRTTSFTQVRDRGITQKRAFFAFVPQLDEGEEGRIAWRFFTSP
EDQVTALLRFTGDDLGITSYAALYPDEAYGRRMAQLFADKVAQHGGSVQRSTSYPPSRPE
EWNAVAASFVGARKVNDYPVPSATFRAVFLPDGWKHMEALVPNLFYHGEDRQVLLGTALW
EQGLAGQKKVDVHNFGLAVFPGAWNPTTPTSAGMALADALRQAGLEEPDAWVGLGYDFVR
LASRLGVQDGWTPASVNAALTRGQAMSWSIAPMHWSTDGRASQDLFLFTPTETGFEPVAP
GTFKERYERVRERHDQRARAAAAPRQ