Protein Info for DVU0775 in Desulfovibrio vulgaris Hildenborough JW710

Name: atpD
Annotation: ATP synthase, F1 beta subunit (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 TIGR01039: ATP synthase F1, beta subunit" amino acids 5 to 466 (462 residues), 832.4 bits, see alignment E=5.1e-255 PF02874: ATP-synt_ab_N" amino acids 8 to 79 (72 residues), 74.7 bits, see alignment E=6.9e-25 PF00006: ATP-synt_ab" amino acids 136 to 349 (214 residues), 252.4 bits, see alignment E=3.7e-79

Best Hits

Swiss-Prot: 100% identical to ATPB_DESVH: ATP synthase subunit beta (atpD) from Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)

KEGG orthology group: K02112, F-type H+-transporting ATPase subunit beta [EC: 3.6.3.14] (inferred from 100% identity to dvu:DVU0775)

MetaCyc: 71% identical to ATP synthase subunit beta, mitochondrial (Homo sapiens)

Predicted SEED Role

"ATP synthase beta chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72E04 at UniProt or InterPro

Protein Sequence (470 amino acids)

>DVU0775 ATP synthase, F1 beta subunit (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSANIGKIVQVIGAVVDVEFPSGQLPNILNALDIKNPNNTDAPDLVCEVAQHLGDNIVRT
IAMDATEGLVRGMEASDTGKPIMVPVGKASLGRIMNVVGRPVDELGPINADKSLPIHRAA
PEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQHGGI
SVFAGVGERTREGNDLYHEMKDAGVLEKAALIYGQMNEPPGARARVALTALACAEYFRDV
ENQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTDLGALQERITSTTKGSITS
VQAVYVPADDLTDPAPATTFSHLDGTLVLSRQIAELGIYPAVDPLDSTSRILDPNVVGVE
HYGVARQVQQVLQKYKDLQDIIAILGMDELSDEDKLTVARARRIQRFLSQPFHVAETFTG
TPGVYVKLEDTIKGFMGILNGDYDHLAEGDFYMVGGIEMALEKYKKRQEQ