Protein Info for DVU0756 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: TPR domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 PF13374: TPR_10" amino acids 152 to 177 (26 residues), 14.8 bits, see alignment (E = 1.1e-05) amino acids 187 to 210 (24 residues), 17.7 bits, see alignment (E = 1.3e-06) PF13432: TPR_16" amino acids 155 to 213 (59 residues), 26.3 bits, see alignment E=3.8e-09 PF13176: TPR_7" amino acids 158 to 178 (21 residues), 15.6 bits, see alignment (E = 6.2e-06) PF14559: TPR_19" amino acids 160 to 214 (55 residues), 32.6 bits, see alignment E=3.7e-11 PF13181: TPR_8" amino acids 183 to 214 (32 residues), 20.4 bits, see alignment 1.9e-07 PF07719: TPR_2" amino acids 184 to 213 (30 residues), 25.2 bits, see alignment 5.4e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_2215)

Predicted SEED Role

"TPR domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72E23 at UniProt or InterPro

Protein Sequence (237 amino acids)

>DVU0756 TPR domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MFLVTGVFVSVRHERTGTGTTARESVQRITWFGTLRDDGVALVMPLSDRMLPTGIIREVP
EERFLEEFMPDQATYEEHFRETAESLRGRLQLASTLPTDLYPEERILLDALSALLHGRSA
AKPVDADIPAVLELLAHGQEGRSAGAFQTRLSGAAVDYRRQGDYPRALLFYDRALTMQGQ
EDRLLFNVARVHYEMGELAEAETCLKRALESNPALEEAGRFLAFLQKTTLQPQAGDE