Protein Info for SO_A0025 in Shewanella oneidensis MR-1

Annotation: ISSod1, transposase OrfA (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 PF01527: HTH_Tnp_1" amino acids 7 to 79 (73 residues), 52.3 bits, see alignment E=1.7e-17 PF13276: HTH_21" amino acids 142 to 193 (52 residues), 38.3 bits, see alignment 3.8e-13 PF00665: rve" amino acids 221 to 318 (98 residues), 98.4 bits, see alignment E=7.8e-32 PF13683: rve_3" amino acids 306 to 372 (67 residues), 47.1 bits, see alignment E=4.9e-16 PF13333: rve_2" amino acids 325 to 378 (54 residues), 39.2 bits, see alignment 1.9e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_A0090)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CCS5 at UniProt or InterPro

Protein Sequence (386 amino acids)

>SO_A0025 ISSod1, transposase OrfA (NCBI) (Shewanella oneidensis MR-1)
MSLKKSHKSYPQAFKDEAVLMVLEQGYSVADAAKSLGVSTSLLYNWKEKHEALQQGITLE
ESERDELKRLRRENKELRMEKEISKKGKRLLCERNEVRFRFIKLQSHLFPITLLCRVMSV
SKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVR
KIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGEGWM
YLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSKQFG
RLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYIKYYNL
ERLHSANNDLSPVEFENSQVKVSSLG