Protein Info for SO4756 in Shewanella oneidensis MR-1

Annotation: ParA family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF13614: AAA_31" amino acids 3 to 177 (175 residues), 223.3 bits, see alignment E=7.6e-70 PF10609: ParA" amino acids 3 to 44 (42 residues), 35.1 bits, see alignment 3.6e-12 PF06564: CBP_BcsQ" amino acids 4 to 246 (243 residues), 46.3 bits, see alignment E=1.4e-15 PF09140: MipZ" amino acids 4 to 163 (160 residues), 47 bits, see alignment E=7.4e-16 PF01656: CbiA" amino acids 5 to 228 (224 residues), 98.4 bits, see alignment E=1.1e-31 PF00142: Fer4_NifH" amino acids 10 to 254 (245 residues), 34.6 bits, see alignment E=5.3e-12 PF02374: ArsA_ATPase" amino acids 10 to 44 (35 residues), 26.5 bits, see alignment 1.3e-09

Best Hits

Swiss-Prot: 53% identical to SOJ_BACSU: Sporulation initiation inhibitor protein Soj (soj) from Bacillus subtilis (strain 168)

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 100% identity to son:SO_4756)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E8B1 at UniProt or InterPro

Protein Sequence (262 amino acids)

>SO4756 ParA family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MGKVIAVANQKGGVGKTTTCVNLAASLAATKRKVLLIDLDPQGNATMGSGVDKYEVENTA
YELLVEEKPFDDIVVKDTAGKYDLIASNGDVTAAEIKLMEFFAREVRLRNALAPIKDQYD
YIFIDCPPSLNMLTVNAMSAADSVLVPMQCEYFALEGLTALIDTITKLAAVVNPGLGIEG
ILRTMYDPRNRLSNDVSDQLKQHFGDKVYRTVIPRNVRLAEAPSFGAPAMYYDKSSAGAK
AYLALAGEMIRRSEQNIQVKRA