Protein Info for SO4685 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF14052: Caps_assemb_Wzi" amino acids 99 to 485 (387 residues), 424.2 bits, see alignment E=2.7e-131

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4685)

Predicted SEED Role

"FIG01058379: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E8H9 at UniProt or InterPro

Protein Sequence (494 amino acids)

>SO4685 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKDVMKAFLTPTLLAASVASGLWFSSTVAAAPWVDASDIYLRADIQALADAGVIRVPVNT
FPLMWSGIGGDLAKVEPELLSPRLVQAFARVNFYYQNAVDNRGNARVKVSGATDPARFQH
YGSDYREKGEVKASYEYLGSRVAYKTTVAETYDPQDNKNFRLDESYFAVIMGNWIATLGT
VEQWWGPGFDSSLHRSNNARPMQSLSLSRNNAAAFETPWLAWIGPWAFKTGFSMAEKERA
VPKTAEWDMRFTAKPIKQLEVGLSWSTLFCGEGQNCDFDSWWDSVAGNAVCIDGSDSCLA
EQRRDAGHKTQSIDLRYADTWQDIPVGLYLEHSCENGSDCGSLWGIDSHFGTAGKQFKLF
MEYSDTFVECGGKANCFYEDPVYLSGARYYGRALGSTYDSDAQVFVLGLVGQFHNSRGFT
SLLRYAKLNKDGTNVATTWAPQPPKEDLLMLELSYRMPVWKGMWSVGGTVSRSEFEVQDN
DTNATFFSSFEYRF