Protein Info for SO4439 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 822 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF16967: TcfC" amino acids 266 to 333 (68 residues), 100.5 bits, see alignment E=2.9e-33 PF15976: CooC_C" amino acids 712 to 807 (96 residues), 107.1 bits, see alignment E=3.7e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4439)

Predicted SEED Role

"CFA/I fimbrial subunit C usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E952 at UniProt or InterPro

Protein Sequence (822 amino acids)

>SO4439 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSSLILTILIATLIFSSCSLASNTSSDLLKLLKQYQDLPDGFSEHFFNAPLTVRITIDNK
LLGEGEIVLGLDTSVQLLKLIDVSESDLDERQQQLWIAQLNQKHKLGLCQKGCQGGILAI
EYNLENSQLSILTANIEKQPSSSHYYALPEQGSYGALFRRQLNWSQSNESDYAGRYNLQA
QASIGQWTTLLEGEVTQNNEETLNSTIQQLYTERQNEGHFYRLGYFSPYAQGLVRQPIIY
SGSSQAVMGVMLGDSNQLLVDQAYASATPIYVTPNRAGVVEIYQNGQLINSQQINAGLQA
IDTKVLPSGIYEVEIRILEDGQVTERRREIINKPIQWQNTEEPFRVNLFAGEKLQDITNW
DDESRRGLSTGVLANYLLTPAIILGAAAQFVDKGWHYSVSADWDWNQQLRFFGNWVMNDQ
QGSDFDLQAVYSYRQGSFVLSHQQQLSQSQSSDITNSNPKKTSASLQHNLGRGHSVSAYL
SHQSEQGQGIDLGWQYSGKLWGRQMSWSLNAFDRPGSINTSGQRDQGGALYFSMNLGDQK
RRMGGGLGSRTSRSGGQEQHAYVDYQQQLDWRGIETIGMGLNTDSYGVGATANSRFSNNI
VSGDAYAQSSSYNSGITGGINLDSMVALGQQGKLGISGQSQNHDAGMIIDVMADTPDIIL
QAEDEHGGSVTLKPGRNLVPVTAYRSGSVQLAIQDYDDTPSVIQPSVLHYHLNKGGVSYQ
QIRVMKTVTVIGRLVNQQGLPLKGALIANHAGRSLSEADGFFAVEMSERHPSLQVEYQGV
QECNLELDLHRVKREQNLLLVGNITCNAQAWAQQTLTENLAK