Protein Info for SO4215 in Shewanella oneidensis MR-1

Name: ftsZ
Annotation: cell division protein FtsZ (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 TIGR00065: cell division protein FtsZ" amino acids 8 to 326 (319 residues), 448.1 bits, see alignment E=1.3e-138 PF00091: Tubulin" amino acids 14 to 173 (160 residues), 180.1 bits, see alignment E=6.1e-57 PF12327: FtsZ_C" amino acids 222 to 316 (95 residues), 123.2 bits, see alignment E=4.5e-40

Best Hits

Swiss-Prot: 78% identical to FTSZ_SODGL: Cell division protein FtsZ (ftsZ) from Sodalis glossinidius

KEGG orthology group: K03531, cell division protein FtsZ (inferred from 100% identity to shn:Shewana3_3739)

Predicted SEED Role

"Cell division protein FtsZ (EC 3.4.24.-)" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E9Q1 at UniProt or InterPro

Protein Sequence (395 amino acids)

>SO4215 cell division protein FtsZ (NCBI ptt file) (Shewanella oneidensis MR-1)
MFEIMDTHSDDAVIKVIGVGGGGGNAVEHMVKHNIEGVEFVVTNTDAQALRKSGAGSTIQ
LGRDVTKGLGAGANPEVGRAAAEEDRENIRAAIKGSDMIFIAAGMGGGTGTGAAPVVAQI
AREEGILTVAVVTKPFPFEGKKRMAYAEQGIAELAKHVDSLITIPNEKLLKVLGRGTSLL
DAFAAANNVLLGAVQGIAELITRPGLINVDFADVKTVMSEMGNAMMGTGVARGEDRAEEA
AEAAVASPLLEDIDLAGARGVLVNITAGMDMSIEEFETVGNHVKAYASDNATVVVGAVID
PEMSDELRVTVVATGIGAEKRPDIQLVSKPAPRPEPVVVEPKVEAYVEEATHVSYAAPKG
NVLPAAPAPAPAPAPSTKHELDYLDIPAFLRKQAD