Protein Info for SO4025 in Shewanella oneidensis MR-1

Annotation: OmpA-like transmembrane domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1480 transmembrane" amino acids 1243 to 1261 (19 residues), see Phobius details amino acids 1269 to 1284 (16 residues), see Phobius details PF13505: OMP_b-brl" amino acids 1271 to 1480 (210 residues), 38.5 bits, see alignment E=2.2e-13 PF01389: OmpA_membrane" amino acids 1289 to 1455 (167 residues), 38.1 bits, see alignment E=2.2e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4025)

Predicted SEED Role

"OmpA-like transmembrane domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1480 amino acids)

>SO4025 OmpA-like transmembrane domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MNALTVYAAEVLDSGQIRFGTGAENSVNTNGNLQQPFYFDQSANQWYQLTFSNYPLDSAI
GVGGDGTNEWNNTGTIVTNPVLTNQALDYSGFTKYNGDKGYGTIVSVGTFSIDGLELEYK
TSYTLPQNSAFINITTQITNRSTVNATNLRMWVGTRDDYVGTLDRPTKNRGNLVNGVFTQ
LAATSEKGKALQIIGGNSGVLFFSPSTKANVVQQRCCQFENVINQDPATSAIDATNDGSY
AFYVRMADLRPGQSESFTWHYAAGKTSELANIAKNVAQAAAITKIMVENNTIHFQAIDFV
DINGITLAKIKIESLPTNGSLTLNGTEVTVNQEIISADFDNLIYTPNAGFFGQDRFSWQA
FVGNAYINAPSSMDITVEEDTDNDGIGNNVDPDDDGDGVNDAQDVFPLDSTEWVDTDNDG
IGNNADTDDDNDGIGNNADTDDDNDGVIDAQDAFPLDPNESVDTDKDGIGNNADPDDDGD
SVNDAQDAFPLDPNETVDTDKDGIGNNADPDDDNDGVKDAQDAFPLDLAESIDTDKDGIG
NNADPDDDNDSVNDAQDVFPLDPNETVDTDKDGIGNNGDPDDDGDSVNDAQDAFPFDPAE
SVDTDKDGIGNNTDPDDDNDGVNDAQDAFPLDPNETVDTDKDGIGNNADPDDDGDSVNDA
QDAFPLDPNESVDTDKDGIGNNADADDDNDGMPDAWELENGLNPLDATDANKDLDQDGRS
NLDEFLQNTNPKKDDVAPVVNVPANVSLNATTLFTKVDAQLLQTQGTVTASDAGNEACCA
VTAVGMVEEGLMLRPGRHIITWKAQDAAGNIGSAEQIVDIYPTISFGKDATVSEGRDSRF
KVVLNGDSPTYPVVVDYTVGGSADSEDHNLSSGSVIIESGVEVQVPFSILADQVKEAEEL
IELSFVGEQNWGVKNTHKTRIVETNVAPELTLIAKQNHQQVTSIAKDAGLVELALSILDD
NSKHDIRWLLPEGVTADISETKQLLSFDPSQLKANMLSLSATVIDNGSPAQTAEINILLK
VLATTPELAERDTDSDGLSDREEGLTDTDQDGIPDYLDNIDETHLLPERGLSTNAYIIEA
DAGVKLTLGQVSMSSAFDGAEVTPNDFKISKLTVDDVPNKGGYFDFIVSNLPEMGQSVNV
VLPQREAIPSRAVYRKYVEGKGWFNFVEDTNNHLSSAKGEQGYCPAPGSDAFKPGLKEGD
WCVQLTIKDGGPNDSDSKVNGTVKDPGGIGQPIMHEVEVTTNGSGSMGLGMVLLMGFMAG
VRRFGRRITGLLALLGLSFGANAVEFNADNLYLQLGAGQGHSSVERSDIAAELTKISDTI
KVTDFDDTSKSYWFELGYKIHPNWGIELGYVDLGNVSVSFTGQVDQLEVESYLDKVSLSH
PDSASGASIGMSYFYPLMDKLVLSGRAGAFFWEGDYSTLLKIKEGAFSYQHQSQNGTDLY
VGMGLDYLPAEHWAIGLALRSYRLDGYHTDVVALSVGFDF