Protein Info for SO3984 in Shewanella oneidensis MR-1
Annotation: magnesium transporter, putative (NCBI ptt file)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 39% identical to ZNTB_YERP3: Zinc transport protein ZntB (zntB) from Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
KEGG orthology group: K03284, metal ion transporter, MIT family (inferred from 100% identity to son:SO_3984)Predicted SEED Role
"Magnesium and cobalt transport protein CorA" in subsystem Campylobacter Iron Metabolism
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q8EAC3 at UniProt or InterPro
Protein Sequence (321 amino acids)
>SO3984 magnesium transporter, putative (NCBI ptt file) (Shewanella oneidensis MR-1) MHDGFIYSLVLSGEQAGSTLSPEQLDNWDPKDGLVWIHLRYRHKKARHWVLHCGLNKVES DALLAEDTRPRTVLAGEGVLLALRGVNLNPDSAPEDMVAVRIYADNQRIISTCERELQSV KDVAGSIMAGTGPTTTGDFIVAICERLTIRKVDFIDTLEEQLLELEEQVVSGNVKDLRTD IAELRRQTVALRRYLGPQKEAFAKMLSEQFVLFNEPEKLKMRETTNNLIRTIEDLDALRD RANVTQEELLSQQSEQLNKRLYFLSLVSVIFLPLGFLTGLLGVNIGGIPGADNNFAFTSF CIILVSLVALQMVILYRFKWL