Protein Info for SO3974 in Shewanella oneidensis MR-1

Annotation: conserved domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF10973: DUF2799" amino acids 30 to 111 (82 residues), 86.2 bits, see alignment E=8.1e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3974)

Predicted SEED Role

"ATPase involved in DNA repair"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EAD2 at UniProt or InterPro

Protein Sequence (182 amino acids)

>SO3974 conserved domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MRYLNFALALTALSLTQCTSLSLEECRDNDWYATGLADGNRGTTASKLNQYQQDCREFNL
KVNAAQWQQGYQQGLISYCLPENGYRIGLAGESYYGVCSNNQFVERYNQGHEQYLVNKRL
AEITERLNAIDIEISSINNKLNNLTDKAKLLRQKNILLNEKNHLLDERLRLRHGDFRFEF
RF