Protein Info for SO3918 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 732 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF10459: Peptidase_S46" amino acids 18 to 728 (711 residues), 903.9 bits, see alignment E=1.4e-275

Best Hits

Swiss-Prot: 92% identical to DPP11_SHEPC: Asp/Glu-specific dipeptidyl-peptidase (dpp11) from Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)

KEGG orthology group: None (inferred from 100% identity to son:SO_3918)

Predicted SEED Role

"FIG01059440: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EAI4 at UniProt or InterPro

Protein Sequence (732 amino acids)

>SO3918 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MRIALVAALVLTCGIATADEGQWQPYQMPSIADKLSARGIDIPADKLADLTSYPMNAVVG
LGYCTASFVSPQGLVVTNHHCAYKAIQYNTKKEHNYLEQGFLATSMDKEPSAGPNERLYI
TEAVTDVTSDVTKDLSQDPLKRYEEIENHSKALIKSCEADDNYRCNVRSFHNGLEYYLIK
QLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFAFLRAYVGKDGKPAAFSEDNIPYT
PKSYLKVNADGVKAGDGVFVAGYPGTTNRYNLTSELKFASDWLYPTQAKRYQLQIDTIEA
MGQKDADIAIKYAGNMASMANRMKKLNGLLAGFKATDIVGIKQQRENDFLAWLTKNPNLN
QNLISELEVLLAEQQLQTQTNYYFTNAQSSTLLTAANNLYRLAKEKQKSDAEREIGYQER
DLAMFSSRLKRIDSSFDVKVDKTLWLQDLNAYLSQPNRVAALDNMLNLNDKNVSLAAKLD
GLYSLTTLTDQAQRLAWMEADAKAFETSSDPFIRLAVALYDTNMAQEKAEKILAGKLSTA
RPAYMAAVIDYYKANNWPVYPDANGTLRISYGMVDGYQSRDALYKQPFTRLDGIVAKHTG
VEPYNAPKKLLDAISVQRFGDHLVKSVYQDPRGWICRLFSCLDKPEEFNSVPVNFLSSVD
TTGGNSGSPVFNGKGELVGLNFDSTYEAITKDWFFNPTITRAVHVDIRYILWMMDEVDHA
DNLIKELDLVRN