Protein Info for SO3888 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 110 PF07411: DUF1508" amino acids 11 to 56 (46 residues), 67.7 bits, see alignment E=3.1e-23 amino acids 61 to 108 (48 residues), 75 bits, see alignment E=1.7e-25

Best Hits

Swiss-Prot: 100% identical to Y3888_SHEON: UPF0339 protein SO_3888 (SO_3888) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K09946, hypothetical protein (inferred from 100% identity to she:Shewmr4_3222)

Predicted SEED Role

"FIG01061901: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EAL4 at UniProt or InterPro

Protein Sequence (110 amino acids)

>SO3888 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEV
AKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLT