Protein Info for SO3854 in Shewanella oneidensis MR-1

Annotation: ISSod12, transposase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 PF13737: DDE_Tnp_1_5" amino acids 19 to 130 (112 residues), 137.9 bits, see alignment E=1.9e-44 PF01609: DDE_Tnp_1" amino acids 115 to 293 (179 residues), 100.2 bits, see alignment E=1.4e-32

Best Hits

Swiss-Prot: 58% identical to TRA2_ECOLX: Probable transposase for transposon Tn903 from Escherichia coli

KEGG orthology group: None (inferred from 100% identity to son:SO_3854)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EAP3 at UniProt or InterPro

Protein Sequence (307 amino acids)

>SO3854 ISSod12, transposase (NCBI ptt file) (Shewanella oneidensis MR-1)
MPKPRYKTTNWKQYNQTLINRGSLTFWIDEDVIAKWKAKVEQPEKGRPRVFSDLAITTAL
MVKRVLSMPLRALRGFIYSVFKLSDIPLSCPHYTCISKRAKTVNIAFKTKTRGTLEHLAI
DSTGLKVYGEGEWEVKKHGTDGKRRVWRKLHIAVDTHSHEIIAAELSLSGVTDAEVMPNL
LKQTHRKIRNISGDGAYDTRACHEAVRRKQALVLIPPREGAALWEQGHPRNLAVSWLQLH
GSNKQWKKQYGYHRRSISETTMYRIKQLLGGTLCMRNYNAQVEETNTMIRALNKLTGLGM
PETHYIL