Protein Info for SO3794 in Shewanella oneidensis MR-1

Annotation: conserved domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 759 PF07661: MORN_2" amino acids 298 to 315 (18 residues), 17.1 bits, see alignment (E = 2.5e-07) amino acids 324 to 340 (17 residues), 17.3 bits, see alignment (E = 2.1e-07) amino acids 368 to 388 (21 residues), 14.8 bits, see alignment (E = 1.4e-06) amino acids 392 to 412 (21 residues), 17.3 bits, see alignment (E = 2.1e-07) amino acids 416 to 433 (18 residues), 14.6 bits, see alignment (E = 1.5e-06) amino acids 439 to 460 (22 residues), 16.6 bits, see alignment (E = 3.6e-07) amino acids 487 to 506 (20 residues), 13.6 bits, see alignment (E = 3.3e-06)

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3794)

Predicted SEED Role

"FIG01057005: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EAU7 at UniProt or InterPro

Protein Sequence (759 amino acids)

>SO3794 conserved domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSLLNVFKAKLFNAKENRGVQQDIPPQTPRPQASLAASPFKPYFSLGIQATPAQANRVDN
QGAINRYYFDNPQTIELLGWELKHESCIFHETLFDSIEVNGPEQYFYLGKDKTCSLLRQH
DAAEQPRWQVELHNLQDLVICNFSIDAAHTVQGDMQDFSSLTGKLQRTLHQIHTEQGRSL
LRIITLSPNITQAVDCNYFGERNGITRQLNALGVLQFEGNFINDQQLGHQTWYDHEGKIN
QVEERQLDGMLLTYYHSNGQIRETAEKDIEGNYINQLKRYYESGNLWLTRPMVANHIHGI
EYMYYEDGKLQAELTHDTGKPVNELWYHPNGNLKQEVHFNQVGKRIETYYEDGQLAWRVQ
LNSQGVNEGLRQEWHPNGVLAKQLNFSNGIAHGNSEQWYPNGQLEQCIPFENGHEQGLAT
WYHENGQLALEIYLEKGLREGLFRRYYESGVLSAEGQYQHNLSIAPFIEYYENQQVQMYL
PHTQGNRDGTARWFYEDGTIRTITEYVVREGLGYLKQSSTYNKQGILESFESHSNTRCGY
NLENNQRQYYQEGTPDTRIEYYQDGTIRWLLTRLEGERYSSKSFSEQGKLIETGFIIYLD
GNYLDVGHWQRFTPQGKLYREAWLSDDGKLNESRHYFDGAEDTQEQTATVQAGADETHLN
LTEVTSTGASTASVQQTEQPILSYHLKFDPDSQLYAMKRYHPNRQIAEEGNLHFKGEDQF
WVGIHNQYDEQGRITLSETYTMSGEAIEHNTESSAIRLN