Protein Info for SO3690 in Shewanella oneidensis MR-1

Annotation: ABC transporter, permease protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 signal peptide" amino acids 19 to 20 (2 residues), see Phobius details transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 274 to 301 (28 residues), see Phobius details amino acids 321 to 345 (25 residues), see Phobius details amino acids 360 to 382 (23 residues), see Phobius details PF12704: MacB_PCD" amino acids 74 to 230 (157 residues), 35.1 bits, see alignment E=1.7e-12 PF02687: FtsX" amino acids 280 to 392 (113 residues), 67.2 bits, see alignment E=1.5e-22

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to son:SO_3690)

Predicted SEED Role

"ABC transporter permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EB44 at UniProt or InterPro

Protein Sequence (399 amino acids)

>SO3690 ABC transporter, permease protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MLHIKPILSSLLRSKSGPLLLLLQIMLSVAIVANASFIIVERLSLMARESGIVENEVFDF
SIYHFDKSTDLVAQDKRDLELLRAIPGVIDVAPSSMAPLSGGGWSSNFTLGPEERAKSTP
NTGMYMSDEHFIDSLGLKLVEGRNFYPQEITTELLEDGGKMIVTKAFVDKVWPNDSALGK
SVYMGSQHYVVIGVVERLQTAWVDNSNVEYSSVLSVNYPADYKRYLVRAKASDIARLKEV
IPEVLHKEYPSRVIEGFTTISERRIEAYRDHELMATVLTMMVVLLLLITSLGVTGMVMFN
IQRRTKQIGTRRALGAKKRDIISYFLVENYLLCLLGGTLGVLLAIQLGQQLMSLYSLPML
ALSYPLFTVVGLFVVTTLAVYLPARKAAKISPATATRTV