Protein Info for SO3578 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein TIGR00726 (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF02578: Cu-oxidase_4" amino acids 17 to 254 (238 residues), 250.8 bits, see alignment E=6.2e-79 TIGR00726: YfiH family protein" amino acids 22 to 256 (235 residues), 205.3 bits, see alignment E=3.9e-65

Best Hits

KEGG orthology group: K05810, conserved hypothetical protein (inferred from 100% identity to son:SO_3578)

Predicted SEED Role

"COG1496: Uncharacterized conserved protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EBE5 at UniProt or InterPro

Protein Sequence (257 amino acids)

>SO3578 conserved hypothetical protein TIGR00726 (NCBI ptt file) (Shewanella oneidensis MR-1)
MLMHDWPVPDNVAIAMTDRHGGVSLAPYDSLNLGLHVGDIPQQVLVNRGILAKQLGLATE
PVWLEQVHGTHVIDLADIKSVDLAPEAQAQQASISVSHPHIADASYTNLAGRVCVVMTAD
CLPVLLCNQQGTEVAAAHAGWRGLCDGVIEASVAHFTSKPNELIAYLGPAIGPMAFEVGA
EVRDAFMVKDPNAESCFIARGDKYLADIIGLAKLRLTKLGVSQVYSADICTVSNMDYFSY
RRDKITGRMASLIWLKS