Protein Info for SO3479 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 38 to 60 (23 residues), see Phobius details PF27621: DUF8355" amino acids 118 to 269 (152 residues), 163.2 bits, see alignment E=2.3e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3479)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (596 amino acids)

>SO3479 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MIQLLFKCQQKTVLISAFAFVFSKIILKMQLLSVFHTLKLIVSLIISCLVVVAAGLFSAS
SIADDTELYVFEASARNGSRPQVLIIFDNSGSMSSLAYGVDAPYENKRNANYAQSGKLFY
SRGSADNAELPNPASQREKRQFNAVLNGCESSWDYLNRYGTFTGFFREYGFSGGTGSWKE
FSELNGNSIAAVDCFEDIQDERLGNATGEANGLPVDSLGSAAKPVRYTAVNIHSSESAKA
SAKAKAQKTGFGSGKVVTVYTEDYLNWHHGTKKKVNKTRLELAQDAIESVILTTPGVDFG
LAVFNMNGPTDFARDGGRIISGIKTMSAQAKIDLLKRVNLISYAQNTPLCETLYEAYRYF
GGQEQYFGDDDSDYNYYDRWGYYQGTYEASKNPFTDPKALTPGTNNYQSPFKPCQNEAYI
VYITDGEPTLDSAADGIIERLTNGVGKHTSNPKSYLSALSGWMRTEDVNPNLAGKQTVRT
FTIGFSEGAASAEHLLKQTAENGGGKYFDATDASQLRSSLQTALNNILEKNASFTSPSVA
SNNFNRTQTFDSAYYSMFLPNKGPRWLGSVDLCCTNVLQQYIGNHININASDTILA