Protein Info for SO3477 in Shewanella oneidensis MR-1

Annotation: pilin biogenesis protein-related protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 PF05567: T4P_PilY1" amino acids 102 to 354 (253 residues), 70 bits, see alignment E=9.7e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3477)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (596 amino acids)

>SO3477 pilin biogenesis protein-related protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MQEASSRTLYSNLGSGLSAFTLSNASRKAGGNARLATYMGVDETELTGLFDWAKGIDVDN
DKNQDLTAASGATPNWRTDIMGDALHSKPLALNFGSEAKPDIRILVGTNHGFLHMFKDKG
DSVSEAWGFMPYELLPNIRDLKANAPTGVHSVYGIDGSPVAYTKMQGKRIEKAWVFVGMR
RGGNAYYALDVTSPDNPSFMWRIDASSPGMGELGQSWSTPVVTTIPSATGDKPVLIFGGG
YSPSTKDGAEIGTDDSRGRGVFIVDAQTGSLIHQFGGSGANTPLPGIANSIPSSVAVLDG
NGDGLTDRIYATDIQGNVWRMDMPSANTSTWSGFKFAALGDKSSVAGDRRFFSGPIVAQT
LISNTFELTKVVNGKSTKVVTSQNIPYDAIVIGSGHRAKPSDVSRSDMFFTLQDRNIVTQ
SFQGKSNQKPVPKTLQLSDLYDVTAAAPSDQASEIAFGQKRGWYYNFSRKGEKSLSSATI
VGGEVYFTSFVPGSDGSVNQCLSSGKGYLYKKNLHRGTRGYKTDYLYAGELVLDTPQLVI
PPAEQPKDPNAKVPTPDMFLIGIGNAAPDEATCESGNPKCIGGGPTTNKIYYYISQ