Protein Info for SO3411 in Shewanella oneidensis MR-1

Annotation: protease, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1094 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF26549: Tricorn_N" amino acids 32 to 289 (258 residues), 254.2 bits, see alignment E=5.4e-79 PF07676: PD40" amino acids 63 to 98 (36 residues), 16.2 bits, see alignment (E = 3.4e-06) amino acids 487 to 513 (27 residues), 26 bits, see alignment (E = 2.9e-09) PF26550: Tricorn_2nd" amino acids 318 to 657 (340 residues), 209.1 bits, see alignment E=3.1e-65 PF14684: Tricorn_C1" amino acids 689 to 747 (59 residues), 72 bits, see alignment 1.2e-23 PF14685: PDZ_Tricorn" amino acids 773 to 860 (88 residues), 51.4 bits, see alignment E=3.8e-17 PF17820: PDZ_6" amino acids 811 to 848 (38 residues), 29.5 bits, see alignment (E = 2e-10) PF03572: Peptidase_S41" amino acids 888 to 1043 (156 residues), 110.2 bits, see alignment E=3.3e-35

Best Hits

KEGG orthology group: K08676, tricorn protease [EC: 3.4.21.-] (inferred from 100% identity to son:SO_3411)

Predicted SEED Role

"Tricorn protease homolog (EC 3.4.21.-)" (EC 3.4.21.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.21.-

Use Curated BLAST to search for 3.4.21.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EBT8 at UniProt or InterPro

Protein Sequence (1094 amino acids)

>SO3411 protease, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MKLRHSVACCMLALGTLSAAQVFAAQSTSNQGYYRAPALHDQTLVFTAEGDLWTQTLGQK
AATRLTTLPAEELGAAISADGKWVAYVANYEGASEVYVIPVTGGVAKRVSFENSRVRVQG
WTSKGEVLYSTDAGFGPANNWMLRLVNPESLTTTDLPLADAVEGVIDANHQYVYFTRFGL
QVTGDNAKVYRGGAKGELWRFKLGGKDEAQLLSGQHQGSVRQPMLWQDRLYFISDSDGND
NLWSMALDGSDAKQLTQYKDWQMRGARMDQGNVVFQLGADIHVFDIASAKDSLLNIELIS
DFAQRREHWVKDPMDYATSANLALAGDKVVITARSHVAITGIDGSRLVQVALPGTYRVRN
AILSQDGKSVYAISDMTGQQEIWQFPADGTSGAKQLTKDGHTLRMSLSLSNDGRYLAHDD
NDGSVWLLDLKKNTNQKIISNGEGLGPYADIRWSGDSRFIALTKSEIGKQRSQVVLYSVD
ENKAQALTSDKYESYSPTFSSDGQWLYFLSNRQFTATPSSPWGDRNMGPVFDKRSQIFAI
SLVKNAKFPFSKPTELTAKTAEKAESKDKPTPVKIDWAGISERLWQVPVDSGNYSQLSAI
EDRLYVLDQAIGDESQPNLMTVKFTEQRPKAEVFAEDVANYSVSADGKKLLLRKKSNEKS
LIIVDVGDKLGDTDNAKVQTDQWQLVISPTLEWQQMFEDAWLMHRDSFFDKNMRGLDWLA
TKAKYQPLLDRLTDRNELNDIFMQMMGELDSLHSQVRGGDLPKDPDAAKGASLGARLQQT
SDGVKIAHIYRNDPELPSQASPLSRIEVDAKKGDQLLAINGTPVTNVADVTRLLRNQQDK
QVLLELKRGGQSHKTVVMPVSTMVDSQLRYLDWVNHNASVVTEASKGKIGYLHLYAMGGG
DIESFAREFYTNYDKDGLIIDVRRNRGGNIDSWIIEKLLRRAWAFWQPTHGTPNTNMQQT
FRGHLVVLTDELTYSDGETFSAGIKALGIAPLIGKQTAGAGVWLSGRNTLTDKGMARVAE
YPQYAMDGRWILEGHGVTPDIEVDNLPFATFNGQDAQLETAISYLKDELIKQPIPALKAQ
PMPAKGMAEDIKAK