Protein Info for SO3313 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 122 to 142 (21 residues), see Phobius details PF13413: HTH_25" amino acids 30 to 88 (59 residues), 68.5 bits, see alignment E=3.5e-23 PF13464: RodZ_C" amino acids 299 to 370 (72 residues), 60.9 bits, see alignment E=9.3e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3313)

Predicted SEED Role

"FIG021952: putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EC31 at UniProt or InterPro

Protein Sequence (374 amino acids)

>SO3313 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKDNEINASVEPVTANEAESTPDVTLGSVLKSAREQMGLSIAQTAVKLHLRPGIVENLEA
DDFSNIASSTYVRGYVKNYARMLGVDNALIEACLARQVPFVTQPPMQSFSRKTTYQARDT
KLKWLSFFIVIVLLGLFVVWWMQRATLVTHVDISKPTAEEVAAANQTLPGDVLLTETDAS
ARLSEIAVNGSMATDGPVKDTDVSSIDPNTNVMTAMEGEQTANSSNESSRNSVAKPNQTV
TASGAVQTPSTTATVTVPVQNTASAQTQVTANASATNVTSPTTNAQTMPAVAGQSTLNIQ
LTGDCWINIVDANGKAIVDGVRGAGANIQASGVLPFKVILGAPTVVSSFTVDGKAISLAE
FPKGRVARLTIPQA